COPASI

As a dedicated simulation environment, COPASI specializes in the dynamics of biochemical networks. Its core strength lies in offering both ODE-based and Gillespie's stochastic simulation approaches, giving users flexibility based on their modeling needs. Full compliance with SBML allows for easy collaboration and model sharing across the scientific community. The software includes advanced analytical capabilities such as metabolic control analysis and optimization routines. Whether for educational purposes or cutting-edge research, COPASI provides a reliable and interoperable platform for understanding complex biological processes.